- Vector Removal: Before vectors are actually trimmed, a
report is displayed listing the vector sequences that will
be trimmed from each sample. Vector matching parameters
give you a fine degree of control over finding and removing
vector sequences.
- Samples that have been reverse complemented during
assembly are shown with their names in a different
color (red in the image above).
- An overview window can be opened that displays
a high level overview of the contigs in your project.
- The overview shows the consensus sequence as colored bars
with overlapping samples shown as black horizontal bars.
Forward samples are displayed above the consensus and reversed
samples are shown below.
- Each contig is saved in a different file. Contig files
can be imported into new projects as if they were a
sample file, which helps break large projects into smaller
modules.
- Sequence data for any contig can be displayed in the
main AlignIR window for editing or sequence verification.
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