Other Publications

SNP's

NA	Identification of single nucleotide polymorphisms in human DNA repair genes. Barry N. Ford, Cindy C. Ruttan, Victoria L. Kyle, Moyra E. Brackley and Barry W. Glickman. Carcinogenesis 2000, 21(11):1977-1981.
NA	High throughput screening for induced point mutations. Trenton G. Colbert, Bradley J. Till, Rachel Tompa, Steven H. Reynolds, Michael N. Steine, Anthony T. Yeung, Claire M. McCallum, Luca Cormai, and Steven Henikoff. Plant Physiology 2001, 126:1-5

537	Functional annotation of a full-length mouse cDNA collection. The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium. Nature 2001, 409:685-690.
NA	Computer-Based Methods for the Mouse Full-Length cDNA Encyclopedia: Real-Time Sequence Clustering for Construction of a Nonredundant cDNA Library. Hideaki Konno, Yoshifumi Fukunishi, Kazuhiro Shibata, Masayoshi Itoh, Piero Carninci, Yuicki Sugahara, and Yoshihide Hayashizaki. Genome Research 2001, 11:281-289.
NA	An Lrp-like Transcriptional Regulator from the Archaeon Pyrococcus furiosus is Negatively Autoregulated. Arie B. Brinkman, Isabell Dahlke, Judith E. Tuininga, Torsten Lammers, Valerie Dumay, Edwin de Heus, Joyce H.G. Lebbink, Michael Thomm, Willem M. de Vos, and John van der Oost. Journal of Biological Chemistry 2000, 275(49):38160-38169.
NA	Characterization and Repeat Analysis of the Compact Genome of the Freshwater Pufferfish Tetraodon nigroviridis. H. Roest Crollius, O. Jaillon, C. Dasilva, C. Ozouf-Costaz, C. Fizames, C. Fischer, L. Bouneau, A. Billault, F. Quetier, W. Saurin, A. Bernot, and J. Weissenbach. Genome Research 2000, 10:939-949.
NA	Genomic Exploration of the Hemiascomycetous Yeasts: 2. Data generation and processing. Francois Artiguenave, Patrick Wincker, Phillippe Brottier, Simone Duprat, Fabien Jovelin, Claude Scarpelli, Jean Verdier, Virginie Vico, Jean Weissenback and William Saurin. FEBS Letters 2000, 487:13-16.
NA	Enhanced Throughput for Infrared Automated DNA Sequencing. L. Middendorf, et. al. Poster, SPIE International Symposium on Biomedical Optics. 1995. San Jose CA.
NA	Continuous, on-line DNA sequencing using a versatile infrared laser scanner and electrophoresis apparatus. L.R. Middendorf, et. al. Electrophoresis 1992, 13, 487-494.

AFLP

539	High-Throughput AFLP® Analysis Using Infrared Dye-Labeled Primers and an Automated DNA Sequencer. A.A. Myburg, D.L. Remington, D.M. O'malley, R.R. Sederoff, and R.W. Whetton. BioTechniques 2001, 30(2): 348-357.
527	A High-throughput AFLP®-based Method for Constructing Integrated Genetic and Physical Maps: Progress Toward a Sorghum Genome Map. Patricia E. Klein, Robert R. Klein, Samuel W. Cartinhour, Paul E. Ulanch, Jianmin Dong, Jacque A. Obert, Daryl T. Morishige, Shannon D. Schlueter, Kevin L. Childs, Melissa Ale, and John E Mullet. Genome Research 2000, 10:789-807.
524	Construction of an AFLP® genetic map with nearly complete genome coverage in Pinus taeda. D.L. Remington, R.W. Whetten, B.-H. Liu, D.M. O'Malley. Theoretical Applied Genetics 1999, 98:1279-1292.
NA	Inter-MITE polymorphisms (IMP): a high throughput transposon-based genome mapping and fingerprinting approach. R.-Y. Chang, L.S. O'Donoughue, and T.E. Bureau. Theoretical Applied Genetics 2001, 102:773-781.

STR

NA	Interlaboratory Evaluation of Short Tandem Repeat Triplex CTT. Kline M.C., Duewer D.L., Newall P., Redman J.W., Reeder D.J. and Richard M., J. Forensic Sci., 1997; 42(5): 897-906.
468	High throughput genotyping: Practical considerations concerning the day to day application. Richard A. McIndoe, R.E. Bumgarner, Russ Welti, and Leroy Hood. SPIE vol. 2680, 341-348.
467	Genetic Linkage Analysis Using Pooled DNA and Infrared Detection of Tailed STRP Primer Patterns. William S. Oetting, Scott C. Wildenberg and Richard A. King. SPIE vol. 2680, 226-234.
450	Linkage Analysis with Multiplex Short Tandem Repeat Polymorphisms Using Infrared Fluorescence and M13 Tailed Primers. W. S. Oetting, et. al. Genomics, 1995, 30, 450-458.
455	A Gene Causing Hermansky - Pudlak Syndrome in a Puerto Rican Population Maps to Chromosome 10q2. S. Wildenberg and W. S. Oetting, et. al. Am. J. Hum. Genet., 1995, 57:755-756.
424	Analysis of tyrosinase gene mutations using direct automated infrared fluorescence DNA sequencing amplified exons. W. S. Oetting, et. al. Electrophoresis 1994, 15, 159-164.

Undergraduate Research

470	Students Discover New Genes in an Investigative Undergraduate Molecular Biology Course. Jonathan D. Monroe and Ivor T. Knight. Council on Undergraduate Research Quarterly. December 1995.

Other

NA	Ligation-mediated PCR for quantitative in vivo footprinting. Shu-Mei Dai, Hsiu-Hua Chen, Cheng Chang, Arthur D. RIggs, and Steven D. Flanagan. Nature Biotechnology 2000, vol 18.
NA	Automated Recording of RNA Differential Display Patterns from Pig Granulosa Cells. J. Motlik, J.W. Carnwath, D. Herrmann, V. Terletski, M. Anger, and H. Niemann. Biotechniques 1998, 24:148-153.
NA	Narayanan, Narasimhachari, et al, 1998. New NIR Dyes: Synthesis, Spectral Properties and Applications in DNA Analysis. In: Near-Infrared Dyes for High Technology Applications. (Eds. S. Daehne, et al.). Kluwer Academic Publishers, The Netherlands. 141-158.
NA	Middendorf, Lyle, et al, 1998. Near-Infrared Fluorescence Instrumentation for DNA Analysis. In: Near-Infrared Dyes for High Technology Applications. (Eds. S. Daehne, et al.). Kluwer Academic Publishers, The Netherlands. 21-54.
NA	Long-Range and Highly Sensitive DNase I Footprinting by an Automated Infrared DNA Sequencer. Masayuki Machida, Hiroshi Kamia and David Sorensen. BioTechniques, 1997, 23(2): 300-303
473	Analysis of the dynamic range and linearity of an infrared DNA sequencer. Richard A. McIndoe, Leroy Hood, and Roger E. Bumgarner. Electrophoresis 1996, 17, 652-658.